Ken Brewer BioDevOps Blog
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    Ken Brewer BioDev Blog


    Making bio-bits go *brrrr*
    • A simpler Nextflow template

      Getting to outputs quicker with lower configuration overhead

      Posted on April 7, 2023

      Nextflow is the the go-to tool for many people in the bioinformatics community who are working on developing data pipelines. Unfortunately, there is a pretty steep learning curve as there is a whole new Groovy-based syntax and framework for code organization to learn. The steepest part of this learning curve... [Read More]
      Tags:
      • nextflow
      • nf-core
      • templates
      • pipelines
      • devops
    • Setting up a personal blog with CI/CD

      Why and how I set up a personal blog using GitHub Pages, Jekyll, and GitHub Actions

      Posted on April 2, 2023

      Based on the recommendation of multiple colleagues in the Flagship Pioneering informatics community, I recently listened to The Phoenix Project on audiobook. This novel focuses on a struggling IT department within the fictional company Parts Unlimited, and how the main character, Bill, turns things around by implementing the core principles... [Read More]
      Tags:
      • devops
      • biotech
      • github
      • github-pages
      • jekyll
      • ci/cd
      • github-actions
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    Ken Brewer  •  2024  •  KenBrewer.com